Mashups in medicine
To browse other articles on a range of HSL topics, see the A-Z index.
This entry is out of date, and will not be updated, May 2017
Mashups in medicine seem to have become less important in recent years, especially in the period 2012 to 2014. While fewer traditional mashups have been created recently there is still room for health librarians to work with and mash digital information and data should they wish to do so. The next step for medical mashups is probably in the areas of syndromic surveillance, locative media (GIS), data curation and open data. For some insight into mashups in the medical field, see this [title PubMed search on mashups]. Note the diversity of applications in mashups especially decision support.
Within the last decade, various consumer devices have captured a range of health and well-being data, but no composite application has brought them together. By analyzing possible correlations or deviations in data across contexts, health librarians can reveal insights in health care, and help clinicians better understand their patients. In terms of their origins, mashups were linked to the headiest days of web 2.0 in that they brought together disparate websites and bits of information to create new, third tools. These tools also encouraged social interaction and collaboration. In bioinformatics, the idea of integrating data with sources of information (in essence, creating biomedical mashups) is of particular importance because it can save time. Rather than searching all relevant sites sequentially, biological entities can be searched together in one metasearch.
What are mashups?
Mashups in medicine
Even though the number and quality of mashups has diminished since the 2009 Mashup Awards), notable mashups in health and medicine are still being created. Existing medical mashups utilize the Google maps api because of the visual aspect of web navigation. With only a handful of mashups to choose from, the following examples are meant to offer health librarians some examples and insight into the state of mashup technology circa 2013.
This government site points to mashups that connect people living with HIV and AIDS to services such as housing and meals, and assistance in finding HIV-related job openings. It also helps to locate AIDS candlelight memorials.
The award-winning, animated Avian flu mashup that tracks the spread of the H5N1 (bird flu) virus worldwide at Nature with the help of the Google maps api. Follow the news of avian flu outbreaks around the world, and attempts by scientists, public health experts, policy makers, and governments to control its spread.
eTBLAST is a text-similarity tool which extracts keywords from queries and weights them to identify a unique subset of the medical literature. A quantitative score is computed based on the above, which is a measure of similarity among the documents searched. eTBLAST outputs a list and ranks items by a similarity score. End users interact with this data as they do using dates, authors or journal name sorting methods in PubMed. The similarity-ranked lists help to compile lists to identify the most frequent and prominent authors in a given domain and the most frequent journals as targets for submission of publication rates over a period of time.
HEALTHMap brings different data sources together to achieve a unified and comprehensive view of the current global state of infectious diseases, and their effects on human and animal health. It also combines the Google maps api, RSS feeds from different news sources, and Google News, ProMED, the World Health Organization and Euro Surveillance. Through an automated text processing system, the data is aggregated by disease and displayed by location for user-friendly access to the original alert. HEALTHMap may be invaluable for health professionals and librarians who want to stay up-to-the minute with information on global health news.
HubMed is an alternative search interface to PubMed incorporating external web services and providing functions to improve the efficiency of literature searching, browsing and retrieval. Users create and visualize clusters of related articles, export citation data in multiple formats, receive daily updates of publications in areas of interest, navigate links to full text and other related resources, retrieve data from formatted bibliographies, navigate citation links and store annotated metadata for articles of interest.
MappyHealth.com is an application to assist in public health surveillance activities using Twitter. It can help track disease trends, and show where diseases are emerging or decreasing. The trending and filtering is done by a series of algorithms and map-reduce jobs. It is then presented in a variety of visual ways. As of now the service is in areas that speak English but will be expanded upon in the near future. The app may be used on your PC, tablet or phone.
TriageMe provides the tools to find health care to save everyone, hospitals and patients, money and time. Patients receive an SMS from triage.me post-emergency room discharge. By sending a text to triage.me with their problem and current address, the person is routed towards the nearest clinic, providing address and link to directions (for smartphone users).
Who Is Sick - GermTrax was started in 2006 with a mission to provide current and local sickness information (an epidemiological mashup) in the Los Angeles area of the U.S. With the belief in the power of people and faith that user-generated content is valuable, this mashup links sickness "data" with maps of the region. Given the slow adoption of web 2.0 technologies by the healthcare industry, Who Is Sick is meant to be a simple, user-friendly prototype for health consumers who wish to see disease outbreaks geographically as they are occurring.
GermTrax tracks the spread of disease on personal, local, and global scales - See more at: http://www.germtrax.com/About.aspx#sthash.jUsxqgHG.dpuf
iSpecies - life sciences mashup
In the area of biology and zoology, iSpecies applies the notion of mash-up to the life sciences, as Declan Butler says in Nature. iSpecies is part of a growing movement where interfaces merge tools such as Google’s maps and scientific information, such as GenBank and UniProt. iSpecies already boasts an array of species, searchable by scientific or common name. A search in iSpecies retrieves sequence data from NCBI, images from Yahoo and articles from Google scholar. It uses Touchgraph developed by HubMed and presents related articles as a spider diagram. Its developer authors iSpecies blog, and argues for further use of tags for images and metadata trawling, widening image search and ranking search results from different tools according to user criteria. If barriers to accessing data are lifted and data can be placed in public databases, information can be accessed directly by search functions underpinning mashups. For example, Yahoo.ca is open to Google maps api data, which was initially blocked; Amazon now provides access to their data for those who want to experiment with mashups. More mashups in medicine are possible with open source tools and data, something health librarians can promote from their individual libraries and blogs.
Health libraries and full participation in Web 2.0
Many different types of health libraries face a number of challenges in order to fully participate in the creation of information sources in web 2.0. One is finding the time to learn about web 2.0 while keeping up to quickly-advancing search technologies and publishing trends. That said, whether health librarians can adopt new technologies in order to move hospital and health libraries into the future - and strengthen relationships with users - is an important question open to debate. Clearly, some of these technologies will not, over the long term, survive. Some librarians have argued that hospitals discourage and prohibit web 2.0 tools from being used on their computer networks. Because host institutions have control over new web technologies, due to protection of data for privacy issues, medical libraries are often limited in their adoption and use of new software. Hospital firewalls block multimedia, and do not permit their use on library computers; thus, there are a number of libraries that cannot create their own intranet (or internet) library web pages. Because librarians are sometimes required to use an institutional content management system that prevents users from viewing and editing, some assert that hospital librarians feel their institution actively prevents technological progress in the interest of data security.
Canadian & international contexts
There is considerable potential to use mashup technology to create unique, Canadian sources of health information. At the moment, there does not seem to be either an academic doing experimental work in this area, or a health librarian doing research on mashups.
Mashup platforms help users create mashups. Here are some examples:
Dr. Raymond Yee see his wiki, from the UC Berkeley School of Information, is the originator of the phrase "gather, create, share" and known for his work on the Scholar's Box. His 2008 book is called Pro Web 2.0 Mashups: Remixing Data and Web Services. It has an accompanying blog, Mashup Guide which also has some material from the book, including a table of contents. The blog is inactive as of 2012.
The overall thrust of the book is:
The book is grounded in "practical interoperability" (a grab-what-we-can-from-wherever approach) while moving toward larger unification efforts such as achieving the semantic web.